FACHINFORMATIONSDIENST BIODIVERSITAET

Publikationen des BIOfid-Teams

2019


Abrami G., Mehler A., Lücking A., Rieb E., and Helfrich P.
TextAnnotator: A flexible framework for semantic annotations

Proceedings of the Fifteenth Joint ACL - ISO Workshop on Interoperable Semantic Annotation, (ISA-15) (accepted), 2019

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Hemati W. and Mehler A.
CRFVoter: gene and protein related object recognition using a conglomerate of CRF-based tools

Journal of Cheminformatics, 11(1), 2019

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Hemati W. and Mehler A.
LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools

Journal of Cheminformatics, 11(1), 2019

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Hemati W., Mehler A., Uslu T., and Abrami G.
Der TextImager als Front- und Backend für das verteilte NLP von Big Digital Humanities Data

Proceedings of the 6th Digital Humanities Conference in the German-speaking Countries, DHd 2019, 2019

Uslu T., Mehler A., and Baumartz D.
Computing Classifier-based Embeddings with the Help of text2ddc

Proceedings of the 20th International Conference on Computational Linguistics and Intelligent Text Processing, (CICLing 2019), 2019

Uslu T., Mehler A., Schulz C., and Baumartz D.
BigSense: a Word Sense Disambiguator for Big Data

Proceedings of the Digital Humanities 2019, (DH2019) (accepted), 2019

2018


Abrami G., Mehler A., Helfrich P., and Rieb E.
TextAnnotator: A Browser-based Framework for Annotating Textual Data in Digital Humanities

Proceedings of the Digital Humanities Austria 2018, 2018

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Abrami G. and Mehler A.
A UIMA Database Interface for Managing NLP-related Text Annotations

Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12 (accepted), 2018

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Ahmed S. and Mehler A.
Resource-Size matters: Improving Neural Named Entity Recognition with Optimized Large Corpora

Proceedings of the 17th IEEE International Conference on Machine Learning and Applications (ICMLA) (accepted), 2018

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Baumartz D., Uslu T., and Mehler A.
LTV: Labeled Topic Vector

Proceedings of {COLING 2018}, the 27th International Conference on Computational Linguistics: System Demonstrations, August 20-26 (accepted), The COLING 2018 Organizing Committee, 2018

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Driller C., Koch M., Schmidt M., Weiland C., Hörnschemeyer T., Hickler T., Abrami G., Ahmed S., Gleim R., Hemati W., Uslu T., Mehler A., Pachzelt A., Rexhepi J., Risse T., Schuster J., Kasperek G., and Hausinger A.
Workflow and Current Achievements of BIOfid, an Information Service Mobilizing Biodiversity Data from Literature Sources

Biodiversity Information Science and Standards, 2, 2018

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Helfrich P., Rieb E., Abrami G., Lücking A., and Mehler A.
TreeAnnotator: Versatile Visual Annotation of Hierarchical Text Relations

Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12 (accepted), 2018

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Kasperek G. and Schmidt M.
A Specialised Information Service for Biodiversity Research, involving large-scale data mobilisation by mining German biodiversity literature

XIX International Botanical Congress (IBC2017), July 23-29, 2018

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Kett A., Abrami G., Mehler A., and Spiekermann C.
Resources2City Explorer: A System for Generating Interactive Walkable Virtual Cities out of File Systems

Proceedings of the 31st ACM User Interface Software and Technology Symposium (accepted), 2018

Koch M., Driller C., Schmidt M., Hörnschemeyer T., Weiland C., I Miko, Yoder M., and Hickler T.
Current progress in the development of taxonomic and anatomical ontologies within the scope of BIOfid

Biodiversity Information Science and Standards, 2, 2018

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Uslu T. and Mehler A.
PolyViz: a Visualization System for a Special Kind of Multipartite Graphs

Proceedings of the IEEE VIS 2018 (accepted), 2018

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Uslu T., Mehler A., Baumartz D., Henlein A., and Hemati W.
fastSense: An Efficient Word Sense Disambiguation Classifier

Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12 (accepted), 2018

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Weiland C., Driller C., Koch M., Schmidt M., Abrami G., Ahmed S., Mehler A., Pachzelt A., Kasperek G., Hausinger A., and Hörnschemeyer T.
BioFID, a platform to enhance accessibility of biodiversity data

Proceedings of the 10th International Conference on Ecological Informatics (accepted), 2018

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2017


Hemati W., Mehler A., and Uslu T.
CRFVoter: Chemical Entity Mention, Gene and Protein Related Object recognition using a conglomerate of CRF based tools

BioCreative V.5. Proceedings, 2017

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Koch M., Kasperek G., Hörnschemeyer T., Mehler A., Weiland C., and Hausinger A.
Setup of BIOfid, a new Specialised Information Service for Biodiversity Research

Biodiversity Information Science and Standards, 1, 2017